Hmmmm???????????

but the same hard disk is working properly in other computer as primary one
Do you mean that if you put the HDD into another machine it will dual boot properly?

I do not think that it is your motherboard. That would normally stop you booting anything, and Fedora still works?

Similarly, I don't think that it is the BIOS, as that has generally done its work before Grub shows up. Does it report the HDD details correctly?

for booting to windows we need everytime a bootable windows cd.
Do you mean that you can boot windows, but only with CD support?

I am a little unclear as to exactly what your situation is, but it sounds rather like a corrupted master boot record (MBR) at this stage.

I would be inclined to run the manufacturer's HDD diagnostics over the drive, just to make sure that your problem does not have physical origins. Obviously if the HDD is on the way out there is not much point trying to fix the software.